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Training resources list

This page displays all training resources mentioned across the Infectious Diseases Toolkit.

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Name Related page Registry
Master of Biomedical Sciences: Infectious and Tropical Diseases Belgium Other
Valentine Vaccine Symposium - University of Antwerp Belgium Other
SIMID Annual Course - University of Antwerp Belgium Other
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data An automated SARS-CoV-2 genome surveillance system built around Galaxy TeSS
Automating Galaxy workflows using the command line An automated SARS-CoV-2 genome surveillance system built around Galaxy TeSS
Screencast of the Galaxy ENA upload tool Using the ENA data submission toolbox for SARS-CoV-2 data YouTube
FAIR data and provenance with RO-Crate and Galaxy General guidelines
BBMRI.QM TRAINING ISO/TS 23494-1:2023 “BIOTECHNOLOGY – PROVENANCE INFORMATION MODEL FOR BIOLOGICAL MATERIAL AND DATA” General guidelines
Provenance training General guidelines TeSS
FAIR data and provenance with RO-Crate and Galaxy Human clinical and health data
Galaxy trainig Human clinical and health data
Common Workflow Language (CWL) trainig Human clinical and health data
Snakemake trainig Human clinical and health data
Data visualisation Data communication Zenodo
European Nucleotide Archive Quick tour by EMBL-EBI SARS-CoV-2 sequencing in Estonia 2021-2022 TeSS
Workshops on delivering FAIR metadata for COVID-19 data portal Netherlands Health-RI
SARS-CoV-2 data analysis Pathogen characterisation Carpentries
SARS-CoV-2, viruses and bacteria data analysis Pathogen characterisation Carpentries
Pathway analysis with the MINERVA Platform Pathogen characterisation Other
European Nucleotide Archive - Quick Tour Pathogen characterisation
SARS-CoV-2 data submission to the European Nucleotide Archive Pathogen characterisation
SARS-CoV-2 data analysis Pathogen characterisation Carpentries
SARS-CoV-2, viruses and bacteria data analysis Pathogen characterisation Carpentries
Learn about DAGs and DAGitty Prototyping federated causal research questions reusing sensitive health data Other
BY-COVID Spring 23 Use Cases Workshop: Integration of socioeconomic data in observational studies on vaccine effectiveness Prototyping federated causal research questions reusing sensitive health data Zenodo
CESSDA Socioeconomic data
SERISS Socioeconomic data
The Mathematics and Statistics of Infectious Disease Outbreaks Sweden GitHub
Master of Science in Epidemiology Switzerland
Infectious Diseases Training Sites in Switzerland Switzerland
Infectious Diseases Training Sites in Switzerland Switzerland
Swiss Tropical and Public Health Institute Switzerland